LeafLiu's repositories
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
cfDNApipe
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
Diablo_ACMG
Tool for automated classification of genetic variants according to ACMG criteria.
grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
MutScan
Detect and visualize target mutations by scanning FastQ files directly
open-cravat
A modular annotation tool for genomic variants
primerDesign
A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
WisecondorX
WisecondorX — An evolved WISECONDOR