LTLA / BiocSingular

Clone of the Bioconductor repository for the BiocSingular package.

Home Page:https://bioconductor.org/packages/devel/bioc/html/BiocSingular.html

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

replacing the interface of irlbaSVD with CppIrlba `request`

xiangpin opened this issue · comments

Thanks for developing the infrastructure (BiocSingular and CppIrlba). They are significant in omics or other data analysis. However,
the runIrlbaSVD uses the irlba, which is slow for big data. Since CppIrlba has implemented the same work with Eigen, whether it will be applied to BiocSinglular.

Indeed, we did have plans for that, but the relevant proposal didn't get funded. 😞

So now there's no one to work on it. (Unfortunately, I don't have the time to improve this package; I just try to fix any bugs and keep things running as best as I can.) Back to the grant proposal drawing board, I guess.