Kewalin Samart's repositories
2020-rmarkdown
RMarkdown for Reproducible Research | Spring 2020 Workshop
cca_zoo
Canonical Correlation Analysis Zoo: CCA, GCCA, MCCA, DCCA, DGCCA, DVCCA, DCCAE, KCCA and regularised variants
CDFpackages_installation
Installing multiple CDF packages from BrainArray: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp
cheatsheets
RStudio Cheat Sheets
CMSE202_Final_Project
Building a model to simulate how blood cells repopulate oxygen in the body
mit-deep-learning-book-pdf
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
CMSE202_Git_Started
CMSE 202 repository for "Git"-ing practice with Git collaboration.
CPBS7711_module3
From a population of solutions for a given set of loci, score the genes on the loci using the method in Tasan et al.
CPBS7711_module4
Implement the genetic algorithm from Tasan et al. and integrate with previous submissions to provide a solution to the 2018 prelim.
curriculum-vitae
Kewalin Samart's current curriculum vitae
cv-resume
A repo for my curriculum vitae/resume
DESeq2
Differential gene expression analysis based on the negative binomial distribution
fgsea
Fast Gene Set Enrichment Analysis
jravilab.github.io
Janani Ravi's Research Group
KS_UG_CompCourseWork
some of KS's undergrad computational coursework
MTM
A unified multi-task learning framework for prediction of individualized tissue gene expression profiles.
NF1_SchwannCell_data
Data processing for NF1 Schwann cell pilot images.
R_intro
Introducing non-coders to R
Rladies-lightning-talk-distill
Distill-flavoured R Markdown for Scientific Manuscripts
rladies_shinydashboards
Shiny Dashboards Workshop for R-Ladies Philly
rmarkdown-cookbook
[WIP] R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown.
rnaseqGene
RNA-seq workflow: gene-level exploratory analysis and differential expression
rticles
LaTeX Journal Article Templates for R Markdown
SCR
Resources for the book "Statistical Computing with R"
styles
Official repository for Citation Style Language (CSL) citation styles.
VSigMatch
Identification of viral communities present in a metagenomics sample using an adapted kmer-signature-based and similairty approach.
workshop-tidyverse
Workshop: Using R/tidyverse to analyze & visualize processed genomics data!