Kaziaa

Kaziaa

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Twitter:@kaziaa

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Kaziaa's starred repositories

GWASTutorial

GWAS Tutorial for Beginners

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practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

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Pocket2Mol

Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets

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3D-Generative-SBDD

💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)

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targetdiff

The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

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deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

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awesome-molecular-generation

Awesome papers related to generative molecular modeling and design.

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mitochondrial-tox

Supporting information from "Predicting the Mitochondrial Toxicity of Small Molecules: Insights From Mechanistic Assays and Cell Painting Data" by Marina Garcia de Lomana, Paula Andrea Marin Zapata, and Floriane Montanari

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MLX_siRNA_RNAseq

GEO: GSE219162

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tidymodules

An Object-Oriented approach to Shiny modules

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practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

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teachopencadd

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

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jazzy

Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.

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squidpy

Spatial Single Cell Analysis in Python

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awesome-biological-image-analysis

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

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training-collection

Collection of bioinformatics training materials

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data-science-learning-resources

A collection of data science and machine learning resources that I've found helpful (I only post what I've read!)

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pharmd

MD pharmacophores and virtual screening

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profiling-recipe

Image-based Profiling Recipe

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imaging-platform-pipelines

Cell Painting and other pipelines from the Imaging Platform

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Neurohacking

Neurohacking Coursera Course

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openmm-tutorial-msbs

OpenMM tutorial for the MSBS course

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Genestat2022

Planning and materials for NORBIS course GENESTAT (2022)

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MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

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ggseg

Plotting tool for brain atlases, in ggplot

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