Kaziaa's repositories
gganimate
A Grammar of Animated Graphics
awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
tutorials
CellProfiler tutorial pipelines and images
Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
awesome-cheminformatics
A curated list of Cheminformatics libraries and software.
Data-Science-Resources
Resources and tutorial for data science
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
dsbook
Repository for data science book
training-material
A collection of Galaxy-related training material
Lilly-Medchem-Rules
Implementation of Lilly Medchem Rules - J Med Chem 2012
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
Neurohacking
Neurohacking Coursera Course
dipDRC
Code for analyzing dose-response curves using DIP rate as the effect metric
eMAGMA-tutorial
A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
pySpacell
A Python package for single-cell spatial image analysis.
Cheatsheets
Cheatsheet for commonly used databases, version control frameworks and programming languages
rdkit_blog
RDKit related blog posts, notebooks, and data.
PSSR
Deep Learning-Based Point-Scanning Super-Resolution (PSSR)
python-data-science
Python3 teaching materials for data science (2 days)
STAR
RNA-seq aligner
scikit-image
Image processing in Python
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.