is set of Conjunction simulations. These simulations supposed to serve for validation of the simulator (theoretical predictions are included) and for presentation and record of novel results.
Every set of simulations is in one folder, which contain:
README.md- the theoretical beckgroundMakefile- a make script for running the analysis (see make help in any analysis folder or http://swcarpentry.github.io/make-novice/ for basic make tutorial)setting*.txt- setting(s) used for the set of simulations*.R- R scripts using R package ConjunctionStats to generatefigures- subfolder with figures are expected to be created by theMakefile
- installed Conjunction (see instructions in the Conjunction's README file)
- installed R and R package ConjunctionStats and its dependencies (HZAR, RColorBrewer)
- GNU make
# Sections
Simulations are categorised according the role in the publication (http://biorxiv.org/)
- V: validation of Conjunction using analytical predictions of known settings
- A: evaluation of phase change for three spatial models
- B: evaluation of the consequences of relative selection model
- N simulations not discussed in publication
- A01 0D
- A04 1D
- A05 1D drift
- A06 1D dispersal
- A07 1D chromosomes
- A08 1D AUFC
- A09 1D recombination rates (lambda)
- A10 2D
all examples and all images in this repository will be released into public domain once the results will be published.