Kamil S. Jaron's repositories
smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
generic_genomics
small scripts, functions or bits of code for parsing genomic data
genomic-features-of-parthenogenetic-animals
A project for gathering and re-analysing all published asexual genomes
reproductive_mode_TE_dynamics
TE dynamics in yeasts with respect to reproduction mode.
Sequence-a-genome
Source files of materials for practicals of master class Sequence a genome.
troll_hunters
LaTeX template for the generation of Troll Hunters the card game
Conjunction
Simulator of secondary CONtact using Fisher's JUNCTION representation of genome admixture.
genomescope
Fast genome analysis from unassembled short reads
asynt
Genome alignment and synteny plots
bioconda-recipes
Conda recipes for the bioconda channel.
ConjunctionExamples
Examples of simulations using Conjunction and ConjunctionStats for analysis
ConjunctionStats
The set of functions written in R created for parsing the output of the forsim.
DEE_assistants
this repository will serve as a platform for sharing data and documents of among PhD students and post-docs of DEE.
Mackintosh_et_al_2022_Bino
Scripts, commands, and data associated with Mackintosh et al. 2022.
MERQURY.FK
FastK based version of Merqury
peculiar-genomic-observations
A collection of peculiar observations in genomics
shiny-k-mers
An R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
slim_templates
my personal LaTeX templates