JuhunC / NICER

NICE Renew

NICER

NICE Renew (other features such as GAMMA, Multitrans will be updated)

Setup using Docker image

1. cat Docker image nicer_centos.tar file should be created after these commands

cd docker/
cat nicer_centos.tar* >> nicer_centos.tar

2. Install Docker

3. Run NICER using Docker

docker load -i nicer_centos.tar
docker run --priviledged -d -p 8080:8080 nicer_centos init
docker exec -it containername

3. Check NICER using web

Quick link: http://localhost:8080

Setup using Eclipse(on Linux)

1. Basic instructions

sudo chmod -c 777 ./NICER/ -R
sudo yum install ld-linux.so.2
sudo yum install epel-release

2. install R language

sudo yum install R

3. install R 'qqman' package

R command : install.packages('qqman')

• Using Eclipse

add all apache/lib/*.jar to the project

4. Change Directory Settings

at

NICER/NICER/src/main/Setup.java

change

final static String mainDir ="set NICER folder directory here";

For Trouble Shooting

a. When NICE/t_test_static doesn't work!!

use following command to allow execution : sudo chmod -c 777 ./NICE/t_test_static