JoQCcoz

miffi

Cryo-EM micrograph filtering utilizing Fourier space information

napari-serialem-navigator

Browse SerialEM session with ease

scipion-em-smartscope

Plugin to manage the interaction with the SmartScope framework.

warp

drawsvg

Programmatically generate SVG (vector) images, animations, and interactive Jupyter widgets

SPACEtomo

Smart Parallel Automated Cryo Electron tomography

AreTomo2

MotionCor3

Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography

emhub

Web application for monitor EM results

IsoNet

Self-supervised learning for isotropic cryoET reconstruction

beanie

Asynchronous Python ODM for MongoDB

django-ninja

💨 Fast, Async-ready, Openapi, type hints based framework for building APIs

django-saml2-auth

Django SAML2 Authentication Made Easy. Easily integrate with SAML2 SSO identity providers like Okta, Azure AD and others.

REPIC

REliable PIcking by Consensus (REPIC) - an ensemble learning methodology for cryo-EM particle picking

solara

A Pure Python, React-style Framework for Scaling Your Jupyter and Web Apps

fygen

fygen is a Python library for Feeltech Signal Generators (FY2300, FY6600, FY6800, FY6900 and more)

SmartScope

SmartScope is a framework for systematic evaluation of cryo-EM specimens

CNIO_Relion_Tools

ptolemy

Public release of Ptolemy package for automated targeting of Cryo-EM grids

MMC-filetransfer

Python package to move, organize and preprocess data from the Macromolecular microscopy consortium

pychip_gui

pyCHIP is a tool for segmentation and feature classification in transmission electron microscopy (TEM) images based on a small support set of user-provided examples.

CryoRL-pytorch

Reinforcement learning enables efficient CryoEM data collection