JoQCcoz / scipion-em-isonet

This plugin is a Scipion wrapper for Isonet, a cryo-electron tomography software for filling the missing wedge information. The official webpage of the software is https://isonetcryoet.com/ and the source code can be found at https://github.com/IsoNet-cryoET/IsoNet

IsoNet plugin

This plugin allows to use IsoNet programs within the Scipion framework

IsoNet stand for ISOtropic reconstruction of Electron Tomography. It train deep neural networks to reconstruct meaningful contents in the missing wedge for electron tomography increase signal-to-noise ratio using the information learned from the original tomogram. The software requires tomograms as input. Observing at about 30A resolutions, the IsoNet generated tomograms are largely isotropic.

You will need to use 3.0.0 version of Scipion to run these protocols.

Protocols

• Isotropic Reconstruction: Isotropic Reconstruction of Electron Tomograms with Deep Learning

Latest plugin version

v3.0.0

• new : First plugin version

Installing the plugin

In order to install the plugin follow these instructions:

1. Install the plugin

scipion installp -p scipion-em-isonet

or through the plugin manager by launching Scipion and following Configuration >> Plugins

To install in development mode

• Clone or download the plugin repository

git clone https://github.com/scipion-em/scipion-em-isonet.git

• Install the plugin in developer mode.

scipion installp -p local/path/to/scipion-em-isonet --devel

Buildbot status

Status devel version:

Status production version:

IsoNet References

The publication associated with IsoNet can be found here: