Jordão Bragantini's repositories
scikit-image
Image processing in Python
cellcanvas
A tool to support interactive machine learning for cryoET data
coin-or-cbc-feedstock
A conda-smithy repository for coin-or-cbc.
coin-or-cgl-feedstock
A conda-smithy repository for coin-or-cgl.
coin-or-clp-feedstock
A conda-smithy repository for coin-or-clp.
coin-or-utils-feedstock
A conda-smithy repository for coin-or-utils.
conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
Higra
Hierarchical Graph Analysis
human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
jookuma.github.io
My homepage
mip-feedstock
A conda-smithy repository for mip.
motile
Multi-Object Tracker using Integer Linear Equations
nanobind
nanobind: tiny and efficient C++/Python bindings
napari-convpaint
Segment images by pixel classification based on pre-trained convolutional layer feature extraction
napari-plugin-template
A template repo used to make new napari plugins
probreg
Python package for point cloud registration using probabilistic model (Coherent Point Drift, GMMReg, SVR, GMMTree, FilterReg, Bayesian CPD)
py-ctcmetrics
Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'
python-mip
Python-MIP: collection of Python tools for the modeling and solution of Mixed-Integer Linear programs
scikit-learn
scikit-learn: machine learning in Python
segment-anything-2
The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
traccuracy
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth