jinyuan sun's repositories
chai-lab-sjydev
Chai-1, SOTA model for biomolecular structure prediction
alphafold3-paddle
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
progen2_trainings
train/(Lora)fine-tine progen2
RFamLlama
A pretrained LM for RNA
PromoterCalculator
PromoterCalculator from Salis lab
Score-Entropy-Discrete-Diffusion
Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)
gemma-chinese
Finetune Gemma for Chinese
streamlit-80
streamlit-based web APP for -80 storage
Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
ChatEnzyme
Ask anything about enzymes
GraDe_IF
Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
Computational-tools-for-protein-design
A maintained list of tools for computational protein design
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
SecretoGen
preliminary code for SecretoGen. Work in progress.
autoMD-gmx
automated simple MD with gromacs
pyvenn
Python module for plotting Venn diagrams of 2..6 sets
localpdb
Python package to manage protein structures and their annotations
Rosetta2Go
Package Rosetta in Docker and Singularity with MPI supported.
alpaca-lora
Instruct-tune LLaMA on consumer hardware