jinyuan sun's repositories
gemma-chinese
Finetune Gemma for Chinese
ChatEnzyme
Ask anything about enzymes
Computational-tools-for-protein-design
A maintained list of tools for computational protein design
alpaca-lora
Instruct-tune LLaMA on consumer hardware
alphafold-peptide-receptors
Identifying peptide-receptor interactions using AlphaFold-Multimer
autoMD-gmx
automated simple MD with gromacs
consistency_models
Official repo for consistency models.
GraDe_IF
Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
localpdb
Python package to manage protein structures and their annotations
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
progen2_trainings
train/(Lora)fine-tine progen2
PromoterCalculator
PromoterCalculator from Salis lab
pyvenn
Python module for plotting Venn diagrams of 2..6 sets
RFamLlama
A pretrained LM for RNA
Rosetta2Go
Package Rosetta in Docker and Singularity with MPI supported.
Score-Entropy-Discrete-Diffusion
Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)
SecretoGen
preliminary code for SecretoGen. Work in progress.
streamlit-80
streamlit-based web APP for -80 storage
Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.