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JiekaiLab
/
scTE
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Stargazers:
102
Watchers:
4
Issues:
101
Forks:
28
JiekaiLab/scTE Issues
Unable to recognize barcode information
Closed
2 years ago
Detect 0 cells expressed at least 200 genes, results output to out.csv
Updated
2 years ago
Comments count
3
imposible to read output file
Updated
2 years ago
Comments count
2
ValueError: X needs to be 2-dimensional, not 1-dimensional.
Updated
2 years ago
Comments count
2
scATAC:TypeError: align() got an unexpected keyword argument 'CB'
Updated
2 years ago
Comments count
2
gzip: out_scTEtmp/o1/out.bed.gz: invalid compressed data--format violated
Updated
20 days ago
IndexError: list index out of range
Updated
2 years ago
Comments count
5
ImportError: cannot import name 'Literal'
Updated
2 years ago
Comments count
1
New release version required
Updated
2 years ago
Comments count
1
Issues post-processing out.h5ad file from custom genome
Updated
2 years ago
Error using bam file from CellRanger
Updated
2 years ago
Comments count
4
Error when running scATAC data
Updated
a year ago
Comments count
1
checkCBUMI may not work as expected
Updated
3 years ago
Comments count
1
[Bug] Parameter of Readanno in scTEATAC is not correct
Updated
3 years ago
scTE freezes after beginning BAM file processing
Updated
a year ago
Comments count
4
KeyError: 'M'
Updated
3 years ago
custom transgenes
Updated
3 years ago
Comments count
1
How to modify the raw fastq file from MARS-seq as in the 10x scRNA-seq format ?
Updated
3 years ago
Comments count
2
Error when running scTEATAC: 'genome required'
Updated
a year ago
Comments count
3
TE_genes_id.mm10.txt?
Updated
2 years ago
Comments count
1
ERROR on 10* single cell bam
Updated
3 years ago
Comments count
3
Stuck while quantifying!
Updated
3 years ago
Comments count
16
broken pipe while processing
Closed
3 years ago
Comments count
1
only TE analysis
Closed
3 years ago
Comments count
1
TE families and classes
Closed
3 years ago
Comments count
3
Issues building an index for a custom genome (Turquoise killifish)
Updated
2 years ago
Comments count
13
got less differential expressed gene
Updated
3 years ago
Comments count
3
scTE building customs reference index ERROR !
Closed
3 years ago
Comments count
2
error when run on test.bam
Closed
3 years ago
Comments count
2
limit of 10000 cells?
Closed
3 years ago
Comments count
1
chromosome number must be consistent when using scTE ?
Updated
3 years ago
Comments count
2
Work with Seurat and bam files merge
Updated
3 years ago
Comments count
5
Error Creating Custom reference for genome
Updated
3 years ago
Comments count
5
TE sequences for motif enrichment
Updated
4 years ago
incomplete tmp folder
Updated
4 years ago
STAR solo include the read 'CR:Z' or 'UR:Z' tags
Closed
4 years ago
Comments count
3
Error when running scTEATAC
Updated
8 months ago
Comments count
11
scTE analysis Bulk RNA-seq data
Closed
3 years ago
Comments count
1
args.out <---> filename
Closed
4 years ago
Comments count
1
reference hg19
Closed
3 years ago
Comments count
3
sh: samtools 未找到命令
Closed
4 years ago
Comments count
4
Failure to parse cell barcodes from bam files
Closed
4 years ago
Comments count
6
scTE: error: argument -CB: invalid choice: 'CB' (choose from 'True', 'False')
Updated
4 years ago
Comments count
16
Custom reference for non-human, non-mouse genome
Closed
3 years ago
Comments count
12
scTE does not finish, stuck on Fetching from annotation file
Closed
4 years ago
Comments count
2
How to use scTE to analyze the single cell datasets of zebrafish?
Closed
4 years ago
Comments count
8
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