JiayouZhang

esm

FastFold

Optimizing AlphaFold Training and Inference on GPU Clusters

dl-vision-papers

深度学习和三维视觉相关的论文

SaProt

[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet

TemStaPro

TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.

SMURF

DeProt

Code for DeProt. A protein language model with quantizied structure and disentangled attention

simde

Implementations of SIMD instruction sets for systems which don't natively support them.

rgn2

ByProt

LLaMA-Adapter

[ICLR 2024] Fine-tuning LLaMA to follow Instructions within 1 Hour and 1.2M Parameters

CASP15

CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

USalign

Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

vq-vae-2-pytorch

Implementation of Generating Diverse High-Fidelity Images with VQ-VAE-2 in PyTorch

Uni3D

[ICLR'24 Spotlight] Uni3D: 3D Visual Representation from BAAI

equifold

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

infernal

RNA secondary structure/sequence profiles for homology search and alignment

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

apex

A PyTorch Extension: Tools for easy mixed precision and distributed training in Pytorch

GLM

GLM (General Language Model)

foldcomp

Compressing protein structures effectively with torsion angles

design-bench

Pytorch-PCGrad

Pytorch reimplementation for "Gradient Surgery for Multi-Task Learning"

chisel

A fast TCP/UDP tunnel over HTTP

anime-webui-colab

webui on colab for weebs lol

DiffDock-PP

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

rust_circuit_public

so-vits-svc

SoftVC VITS Singing Voice Conversion