Hello and thank you for using the Single-Cell Portal. We hope the portal will contribute to open science by enabling visualizing and sharing scientific insight and data surrounding single-cell RNA-Seq.
Thank you for being a part of this open science effort!
To visit the portal please go to: https://portals.broadinstitute.org/single_cell
For tutorials and descriptions of files please go to: https://github.com/broadinstitute/single_cell_portal/wiki
Scripts to help when working with data files for the portal are made available in this repo and require python 3.X. Using these scripts to verify the format of input files can be found at https://github.com/broadinstitute/single_cell_portal/wiki/File-Definitions .
To download:
use the download button at https://github.com/broadinstitute/single_cell_portal
To clone using git in a command line terminal:
$ git clone https://github.com/broadinstitute/single_cell_portal.git
We recommend using virtualenv for managing package dependencies. To install all required packages, clone this repo as described above, then:
$ cd single_cell_portal
$ virtualenv -p python3 env
$ source env/bin/activate
$ pip install -r requirements.txt
To report a bug or suggest an improvement please create a new issue at: https://github.com/broadinstitute/single_cell_portal/issues
Email us at single_cell_portal@broadinstitute.org
Happy Science!!!
The Single-Cell Portal Team