Japrin

STARTRAC

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

sscClust

simpler single cell RNAseq data clustering

scPip

A pipeline for scRNA-seq data analysis

sscVis

simpler single cell RNAseq data Visualization

cancer

scExplorerShiny

scRNA-seq data explorer based on Shiny

inferCNV

Inferring CNV from Single-Cell RNA-Seq

mclust

based on mclust 5.4.5 (https://cran.r-project.org/web/packages/mclust/index.html)

scVI

Deep generative modeling for single-cell transcriptomics

awesome

:sunglasses: Curated list of awesome lists

bv

Data Viewer in Terminal for Bioinformatician

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

clusterProfiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

echarts4r

🐳 ECharts 4 for R

garnett

Automated cell type classification

harmony

Scalable integration of single cell RNAseq data for batch correction and meta analysis

iSEE

R/shiny interface for interactive visualization of data in objects derived from the SummarizedExperiment class

kobackupdec

Huawei backup decryptor

monocle-release

PanC.T

r-appveyor

Tools for using R with AppVeyor (https://appveyor.com)

scDVA

An R shiny based tool used for single cell RNA-seq data visualization and analysis.

SCope

Fast visualization tool for large-scale and high dimensional single-cell data

scPanoView

scReClassify

Post hoc cell type classification of single-cell RNA-sequencing data.

single_cell_portal

sk

some usefull script

ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA)

TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer