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JamieLyu's starred repositories

deepTools

Tools to process and analyze deep sequencing data.

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ChIPLine

ChIP-seq analysis pipeline

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chip-seq-pipeline2

ENCODE ChIP-seq pipeline

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seqplots

:chart_with_upwards_trend:SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

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Krona

Interactively explore metagenomes and more from a web browser.

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civic-server

Backend Server for CIViC Project

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deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

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dude-clean

Dude database cleanup script

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NLPython

This repository contains the code related to Natural Language Processing using python scripting language. All the codes are related to my book entitled "Python Natural Language Processing"

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dlaicourse

Notebooks for learning deep learning

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mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

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bam-readcount

Count bases in BAM/CRAM files

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hap.py

Haplotype VCF comparison tools

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A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

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biopython

Official git repository for Biopython (originally converted from CVS)

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Atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

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Aegis

Application for Epidemiological Geographic Information System (AEGIS): a system for semi-automatic GIS visualization based on the OMOP Common Data Model.

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