Illumina / ExpansionHunterDenovo

A suite of tools for detecting expansions of short tandem repeats

Illumina/ExpansionHunterDenovo Issues

Documentation: "--test-method" should be "--test-params"
Updated 3 months ago
Generate STR profiles for each sample
Updated 6 months ago
Number of samples in outlier analysis
Updated 7 months ago
Interpreting EHDN locus-based analysis results
Updated 9 months ago
--min-inrepeat-read-pairs argument not working?
Closed 10 months ago
Difference in normalised counts for the same sample in str-pofiles/....motif.tsv and
Updated a year ago
Bioconda
Updated a year ago4
Building on M1 Mac from source
Updated a year ago
difference of tandem repeats counts between PCR-based data and PCR-free data
Updated 2 years ago
Read block operation failed with error
Updated 2 years ago
MacOSX install error when downloading boost_1_67_0.tar.bz2
Updated 2 years ago2
Interpreting EHDN motif-based analysis results
Updated 2 years ago4
Difficulty understanding the output from EHDN
Updated 2 years ago4
Bonferroni Correction
Updated 2 years ago
merge profile
Updated 2 years ago
Restricting str-profile generation to contigs/regions provided in .bed or similar
Updated 2 years ago1
EHDN truncated output
Updated 3 years ago3
Some Question about EHdn..
Updated 3 years ago13
Boost install URL broken
Closed 3 years ago2
Inaccurate copy number
Updated 3 years ago1
More questions about EHdn
Closed 3 years ago9
Versions of the json profiles
Updated 3 years ago1
manifest for outlier
Closed 3 years ago9
Motif size
Closed 3 years ago4
get sequence on reference genome of STR
Updated 3 years ago3
Error message when running annotate_ehdn.sh
Closed 4 years ago5
Could you please tell me how to filter the result with the zscore?
Closed 3 years ago3
post-processing step
Updated 3 years ago2
Merging requires much memory. Is there a way to split the json output ?
Updated 3 years ago5
Guide on prioritization of outliers
Updated 4 years ago11
Motif length variation
Updated 4 years ago2
outlier script requires at least one case, but
Updated 4 years ago1
Non PCR-free WGS
Closed 4 years ago3
counts column format
Closed 4 years ago2
merge error information "invalid contig name MT"
Updated 4 years ago6
--min-unit-len and --max-unit-len arguments to merge not working?
Updated 4 years ago
option to compress output files
Updated 4 years ago
option for analysis scripts to omit counts from output files
Updated 4 years ago
Merging profiles: Unexpected range format error
Updated 4 years ago4
analysis script support for compressed multisample profile file
Updated 4 years ago
'Parameters' object has no attribute 'target_regions'
Closed 4 years ago4
Set seed for reproducible resampling results
Closed 5 years ago3
Dependencies missing for secondary scripts
Updated 5 years ago1
Updated release with precompiled binary
Closed 5 years ago1