Ichoran

thyme

Thyme is a microbenchmark utility for Scala. It includes Parsley, a (simple) local profiling tool.

kse

The Kerr Scala Extensions contain core functionality missing from the Scala standard library.

functional-antipattern

Examples of where functional programming, or a particular functional programming idiom, leads one to an antipattern. The goal is to effectively use the strengths of computers to augment our weaknesses.

kse3

Kerr Scala Extensions for Scala 3

scala-java8-streams

scala-collection-laws

An exploration of partially automatic generation of tests for the entire collections library.

choreography

Analysis software for post-capture analysis of _C. elegans_ behavior.

mwt-core

Core image processing routines for the Multi-Worm Tracker: track hundreds of animals in real time!

almond

A Scala kernel for Jupyter

Ammonite

Scala Scripting

annotation_buddy

BOSL

The Belfry OpenScad Library - A library of tools, shapes, and helpers to make OpenScad easier to use.

breeze

Breeze is a numerical processing library for Scala.

collection-strawman

Experimenting with Scala Collections designs for Scala 2.13

dbde-video-cpp

A library for Dynamic Bit Depth Encoded videos in C++ (useful for certain kinds of scientific imaging)

directVSmonad

An exploration of direct and monadic patterns for solving nontrivial problems

fastparse

Writing Fast Parsers Fast in Scala

ichoran.github.io

Discussions of and perhaps tutorials on how to write software excellently

metrology

Analyze animal-by-animal summary metrics from Choreography-processed output of the Multi-Worm Tracker

mwt-labview

LabView front end to the Multi-Worm Tracker: track your worms in real time!

mwt-utilities

Utilities to help extract data from the Multi-Worm Tracker's output data, without going through a full analysis as with Choreography.

MWT_R_analysis_Files

pika-mirror

Pika Mirror will back up old files, some of which may themselves be backups, onto new storage unit(s).

scala

The Scala programming language

scala-java8-compat

A Java 8 compatibility kit for Scala.

test-github-pages

Just testing GitHub Pages.

ticklish

Ticklish allows Teensy 3-series boards to provide stimulus trains suitable for animal behavior experiments

tracker-commons

Compilation of information and code bases related to open source trackers for c. elegans

Westlake-DV

DV

wishbone

Wishbone is an algorithm to align cells along developmental trajectories with branches