INM-6 & IAS-6

multi-area-model

A large-scale spiking model of the vision-related areas of macaque cortex.

viziphant

Visualization of electrophysiological data from Elephant

networkunit

A SciUnit library for validation testing of spiking neural network models.

Python-Module-of-the-Week

cobrawap

Collaborative Brain Wave Analysis Pipeline (Cobrawap)

nnmt

Neuronal Network Meanfield Toolbox - official documentation: https://nnmt.readthedocs.io

hybridLFPy

Biophysics-based prediction of LFPs from point-neuron networks

elephant

Elephant is the ElectroPhysiology Analysis Toolkit

beNNch

Modular performance benchmarking framework for neural network simulations

closed-loop-learning-in-autonomous-agents

Simulation and analysis scripts for "A closed-loop toolchain for neural network simulations of learning autonomous agents".

python-odmltables

An interface to convert odML structues to and from table-like representations, such as spreadsheets

swan

Swan (Sequential Waveform Analyzer) is an open-source graphical tool for tracking single units across multiple sessions of electrophysiological data that was recorded using chronically implanted microelectrode arrays.

lif_meanfield_tools

LIF Meanfield Tools

reproducing-polychronization

Builder

Compile scripts for local installs of software packages

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

beNNch-models

PyNEST models for performance benchmarking with beNNch

h5py_wrapper

A wrapper to conveniently store nested python dictionaries in hdf5 files.

SPADE_applications

Repository containing code necessary to reproduce the results of Stella, A., Quaglio, P., Torre, E., & Grün, S. (2019). 3d-SPADE: Significance Evaluation of Spatio-Temporal Patterns of Various Temporal Extents. Biosystems

viziphant-new

Visualization of Elephant

beNNch-plot

Plotting styles for beNNch

datareport

Tool to combine YAML datasets with Jinja2-based templates

alpaca

Automated Lightweight Provenance Capture

collab-waves

Code Repository for the Collab "Electrophysiology Data Analysis Showcase: Spatio-temporal Beta Activity in Motor Cortex"

elephant-tutorial-data

Temporary solution to host datasets that are used in the Elephant example tutorials.

L2L

Learning to Learn: Gradient-free Optimization framework

nixpy

Python bindings for NIX

python-meegkit

MEEGkit: M/EEG processing toolkit in Python 🧠🔧

python-odml

odML libraries and editor

SPADE_surrogates

Repository containing code necessary to reproduce the results of Stella, A., Bouss, P., Palm, G., & Grün, S. (2021). Generating surrogates for significance estimation of spatio-temporal spike patterns