IGVF-DACC / igvf-catalog

Catalog API for the IGVF project

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Accessing source data

PauBadiaM opened this issue · comments

Hi,

As far as I understood, right now this API builds the knowledge graph only with the sample data stored in data/samples/. May I ask how did you generate them? For example for the eQTL data, how could I access the total amount of available data? Thanks!

the eQTL data we are importing was downloaded from GTEx. Other data produced by the IGVF project (and other public xQTL datasets would be added later as well.

https://storage.googleapis.com/gtex_analysis_v8/single_tissue_qtl_data/GTEx_Analysis_v8_eQTL.tar