PauBadiaM

Pau Badia i Mompel's repositories

R package for Pathway RespOnsive GENe activity inference

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This project is work in progress! https://www.sc-best-practices.org

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VAE example using TF 2.0 and using tabular data

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This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL

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Teaching material for 2022 SysBio Course

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Gene regulatory network containing signed transcription factor-target gene interactions

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Python package for compositional data analysis

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An R package to decouple gene sets and statistics of functional genomics tools

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R package to access DoRothEA's regulons

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Single-Cell Analysis in Python. Scales to >1M cells.

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Shallow Introduction to Deep Learning

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LIANA+: an all-in-one framework for cell-cell communication

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Multiome GRN inference.

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A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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Test repo to reproduce the CI error with fisher as a dependancy

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