IGVF-DACC's repositories
igvf-catalog
Catalog API for the IGVF project
igvf-metadata-submitter
Metadata Submitter & Editor based on Google Apps Script
igvf-python-client
Autogenerated Python client for the IGVF API
fastq_stats
Simple rust program that calculates couple of fastq stats
igvf-jamboree
IGVF Jamboree code based on Zero to Jupyterhub with Kubernetes on GCP
igvf-r-client
Autogenerated R client for the IGVF API
igvf_utils
Tools that are useful to any IGVF submitting group.
seqspec
machine-readable file format for genomic library sequence and structure
shared-infrastructure
Reusable or common CDK pieces
catalog-join-tables
Create join tables for columnar database
cdk-igvf-dev
Repo for internal infrastructure in igvf-dev account
cdk-igvf-prod
Repo for internal infrastructure in igvf-prod account
cdk-igvf-sandbox
Repo for internal infrastructure in igvf-sandbox (igvf-staging) account
cdk-igvf-staging
Repo for internal infrastructure in igvf-staging account
fastq-rs
Fork of rust fastq package
igvf-async-python-client
Autogenerated async Python client for the IGVF API
igvf-client-openapi-spec
Autogenerated OpenAPI specification used by IGVF clients
igvf-minidb
Subsamples IGVF production DB to create a minimal DB for test purposes
igvf-ng
The Next.js-based UI portion of IGVF-DACC that works with igvfd
igvf-subsample-db
This tools subsamples Postgres DB of an IGVF server
pytest_exact_fixtures
Make pytest fixtures work more like zope.testrunner layers