Institute for Genome Sciences's repositories
portal_client
Python-based client for downloading data made available through portals powered by the GDC-based portal system..
portal-api
API for the IGS data portal
osdf-python
A Python OSDF (Open Science Data Framework) client
HMP_database_builder
Scripts to build the HMP database
osdf-deb-docker
A docker container to generate the deb package for OSDF
osdf-nodejs-client
A node.js client for the Open Science Data Framework (OSDF)
rnaseq-pipeline
IGS Transcriptomics Pipeline
portal-manifest-downloader
Client for retrieving a Portal data manifest file from the cloud
report-generator
Repository for new python based report and bdbag generator.
rnaseq-docker
Dockerized version of the IGS transciptomics pipeline and associated utilities
disease-ontology
Disease Ontology
docker_lgtview
This repository houses a Dockerfile that can be used to build an example and customizable instance of LGTview
grove-pipeline
The IGS RNASeq SNP pipeline
lgtseek-pipeline
The IGS lateral gene transfer pipeline
vmrc-osdf-schemas
OSDF JSON-Schema files for the Vaginal Microbiome Research Consortium (VMRC)