Giters
Institute for Genome Sciences (IGS)

Institute for Genome Sciences

IGS

Geek Repo

IGS has helped revolutionize genomic discoveries in medicine, agriculture, environmental science and biodefense.

Location:Baltimore, MD

Home Page:http://igs.umaryland.edu

Github PK Tool:Github PK Tool

Institute for Genome Sciences's repositories

Chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

Language:C++License:MITStargazers:23Issues:18Issues:2

portal_client

Python-based client for downloading data made available through portals powered by the GDC-based portal system..

Language:PythonLicense:MITStargazers:16Issues:5Issues:25

FADU

Feature Aggregate Depth Utility

Language:JuliaLicense:MITStargazers:10Issues:3Issues:12

gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Language:Jupyter NotebookLicense:AGPL-3.0Stargazers:10Issues:5Issues:647

portal-api

API for the IGS data portal

Language:PythonStargazers:9Issues:4Issues:1

OSDF

Open Science Data Framework (OSDF)

Language:JavaScriptLicense:MITStargazers:8Issues:5Issues:0

biocode

Bioinformatics script collection

Language:PythonLicense:MITStargazers:6Issues:16Issues:0

portal-ui

UI for IGS project portals such as the HMP data portal found at https://portal.hmpdacc.org.

Language:JavaScriptLicense:Apache-2.0Stargazers:4Issues:4Issues:0

osdf-python

A Python OSDF (Open Science Data Framework) client

Language:PythonLicense:MITStargazers:3Issues:13Issues:1

HMP_database_builder

Scripts to build the HMP database

Language:PythonStargazers:2Issues:4Issues:0

imp

IGS Metagenome Assembler

Language:PerlStargazers:1Issues:17Issues:0

osdf-deb-docker

A docker container to generate the deb package for OSDF

Language:ShellLicense:MITStargazers:1Issues:4Issues:0

osdf-nodejs-client

A node.js client for the Open Science Data Framework (OSDF)

Language:JavaScriptLicense:MITStargazers:1Issues:4Issues:0

rnaseq-pipeline

IGS Transcriptomics Pipeline

Language:PerlStargazers:1Issues:7Issues:0

unified-schema-ecosystem

Language:PythonStargazers:1Issues:4Issues:0

portal-manifest-downloader

Client for retrieving a Portal data manifest file from the cloud

Language:PythonStargazers:0Issues:9Issues:0

rnaseq-docker

Dockerized version of the IGS transciptomics pipeline and associated utilities

Language:PythonStargazers:0Issues:6Issues:0

cvd-scripts

Language:PythonStargazers:0Issues:2Issues:0

disease-ontology

Disease Ontology

Stargazers:0Issues:3Issues:0

docker_lgtview

This repository houses a Dockerfile that can be used to build an example and customizable instance of LGTview

Language:ShellStargazers:0Issues:4Issues:0

Emergence

A biological sequence annotation and analysis system.

Language:PythonLicense:NOASSERTIONStargazers:0Issues:19Issues:0

ergatis

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.

Language:PerlLicense:NOASSERTIONStargazers:0Issues:16Issues:0

GALES

Genomic Annotation Logic and Execution System

Language:PythonLicense:MITStargazers:0Issues:1Issues:0

grove-pipeline

The IGS RNASeq SNP pipeline

Language:PerlStargazers:0Issues:5Issues:0

LGTHGT

Contains LGTView (http://www.igs.umaryland.edu/labs/lgthgt/analysis/lgt-view/) and all of its necessary installation components.

Language:HTMLStargazers:0Issues:3Issues:0

lgtseek-pipeline

The IGS lateral gene transfer pipeline

Language:PerlStargazers:0Issues:5Issues:0

report-generator

Repository for new python based report and bdbag generator.

Language:PythonStargazers:0Issues:5Issues:0

twinblast

View 2 blast reports at once

Language:PerlLicense:BSD-3-ClauseStargazers:0Issues:7Issues:0

vmrc-osdf-schemas

OSDF JSON-Schema files for the Vaginal Microbiome Research Consortium (VMRC)

Stargazers:0Issues:4Issues:0