Giters
HumanCellAtlas
/
matrix-service
DCP Expression Matrix Service
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Stargazers:
12
Watchers:
21
Issues:
213
Forks:
4
HumanCellAtlas/matrix-service Issues
isoform expression analysis
Updated
2 years ago
Test [please ignore]
Closed
4 years ago
Update ETL to support Optimus v1.4.0
Closed
5 years ago
Can't download matrix for the Organoids dataset
Updated
5 years ago
Include specimen_from_organism disease fields in filters and fields endpoints
Updated
5 years ago
Update `aws_disposition` values from `blessed` to `standard`
Updated
5 years ago
Run Matrix Service for scRNAseqSystemicComparison
Updated
5 years ago
Comments count
3
Write cell ids into barcodes.tsv in the mtx output
Updated
5 years ago
Comments count
2
Fix Batch concurrency bug when c > 5
Updated
5 years ago
Automate generation of Data Browser downloadable per-project matrix service output files
Updated
5 years ago
Comments count
2
Parse species from DB manifest in v0
Updated
5 years ago
Run Matrix Service for TissueStability
Updated
5 years ago
Run Matrix Service for Reprogrammed_Dendritic_Cells
Closed
5 years ago
Comments count
13
Run Matrix Service for KidneySingleCellAtlas
Closed
5 years ago
Finalize mtx format
Updated
5 years ago
Remove matrix for spatio-temporal kidney project
Closed
5 years ago
Comments count
3
Migrate specimen table to cell suspension table
Closed
5 years ago
[non-breaking] Updates to Optimus Outputs
Closed
5 years ago
Comments count
2
Refactor transformer logic to be 1 per table
Updated
5 years ago
Remove special case in specimen_library.resolve_ontology_ols
Updated
5 years ago
Investigate intermittent GET /matrix 504s during functional tests
Updated
5 years ago
Refactor DSS /search -> Query Service
Updated
5 years ago
Modify queries in v0 to use bundle uuid instead of bundle fqid
Closed
5 years ago
Unable to generate client for java via swagger-codegen
Closed
5 years ago
Comments count
7
`total_umis` is a categorical variable in the loom output
Closed
5 years ago
Comments count
1
1-pager design of Automation of Project Matrices
Closed
5 years ago
Change human gencode annotation
Closed
5 years ago
Comments count
1
How to determine expected metadata content in Matrix Service loom files
Updated
5 years ago
Comments count
2
Document how users can join rows in manifest, matrix and metadata.tsv
Updated
5 years ago
Capture Code Coverage Metrics
Closed
5 years ago
Comments count
1
Run Matrix Service for SingleCellLiverLandscape
Closed
5 years ago
Comments count
2
Re-enable matrix service in dcp-wide integration tests
Closed
5 years ago
Comments count
4
Generate per-project matrix service output files in Data Browser S3 bucket
Closed
5 years ago
Comments count
6
Assessing the relevance of organoids to model inter-individual variation is missing loom download
Closed
5 years ago
Census of Immune Cells is missing loom and csv downloads
Closed
5 years ago
Process Barcelona Data Sets
Closed
5 years ago
Remediate High vulnerability
Closed
5 years ago
Comments count
1
Refining the threshold for total_umis
Updated
5 years ago
Move DynamoDB to On-Demand billing
Closed
5 years ago
Replacing ! with / in Zarr outputs
Updated
5 years ago
Comments count
2
Handle batch job ids that expire
Closed
5 years ago
Comments count
1
Implement cache invalidation tool
Closed
5 years ago
Caching
Closed
5 years ago
Investigate data version definition
Closed
5 years ago
Comments count
3
Add expiration policy to results bucket
Closed
5 years ago
Comments count
1
Implement caching layer
Closed
5 years ago
Comments count
1
Update subscription to DSS to only receive data adhering to compatible schemas
Closed
5 years ago
Update data version on loader success
Closed
5 years ago
Matrix service grafana dashboard is not in sync with v1
Updated
5 years ago
Define data version per environment
Closed
5 years ago
Comments count
2
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