Human Cell Atlas

metadata-schema

This repo is for the metadata schemas associated with the HCA

data-store

Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")

sctools

Utilities for large scale distributed single cell data processing

data-consumer-vignettes

Simple walk-throughs of interacting with the DCP as a downstream data consumer.

matrix-service

DCP Expression Matrix Service

fusillade

Federated User Identity Login & Access Decision Engine

cloud-blobstore

Simple API that abstracts out differences between the blobstores across different cloud providers.

query-service

Prototype implementation of the DCP Query Service, a metadata search engine for HCA

zentool

CLI tool for working with ZenHub / GitHub / Google Sheets

pipeline-tools

Pipeline-tools for HCA DCP Secondary Analyses Service

upload-service

DCP Ingestion File Upload Service

falcon

The workflow starter of secondary analysis service

secondary-analysis

Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform

bronze

A minimal alarm that reads data from Google Sheets and alerts people via Slack

data-monitoring-dashboard

data-store-scale-test

Scalability tests for the HCA Data Storage System ("blue box")

dcp-diag

Development and operations diagnostic tools and libraries

ingest-validator-js

Javascript validator for HCA metadata

logs

Infrastructure for centralizing and indexing logs

schema-template-generator

Interactive UI for generating metadata schema templates

matrix_semantic_map

Specification for a JSON schema to map expression matrix annotations to ontology terms

metadata-schema-publisher

Script for creating a repo of schemas in response to Github commits

connexion

Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support

ingest-accessioner

Scripts for Ingest Accessioning Service

ingest-central

Ingest Central is the hub repository for the ingest service

ingest-fastq-validator

ingest-node-accessioner

Ingest accessioning component using node-js

ingest-staging-manager

Client for handling the creation of staging areas triggered by the ingest service

metadata-migration

Proof of concept library for migrating metadata.

status-api

Return build and application status badges