Hocnonsense

Bend

A massively parallel, high-level programming language

macropy

Macros in Python: quasiquotes, case classes, LINQ and more!

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

cactus

Official home of genome aligner based upon notion of Cactus graphs

pgap

NCBI Prokaryotic Genome Annotation Pipeline

panaroo

An updated pipeline for pangenome investigation

mag

Assembly and binning of metagenomes

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Cell_ACDC

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

phables

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes

CompareM2

🦠📇 Microbial genomes-to-report pipeline

mantis

A package to annotate protein sequences

uDance

args_oap

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

LucaOneTasks

The project of the downstream tasks based on LucaOne's Embedding.

contig-extender

mr.pareto

MR.PARETO - Modules & Recipes for Pragmatic Augmentation of Research Efficiency Towards Optimum

magpipe

mebs

Protocol for finding informative protein families and then using them to score omic samples

spaa

Miscellaneous functions for analysis of species association and niche overlap

DeepEnzyme

Hydrothermal_plume_omics_Zhou_et_al._2021

Bioinformatic analyzing methods for hydrothermal plume omics paper

single-cell-papers

Database for collecting and curating scientific papers related to single-cell and spatial transcriptomics sequencing.

ConDiGA

🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics

SgVG_supraglacial_virome

scripts for the GGV projects

eco_evolutionary_factors_and_hgt

MetaGaia

KB-ModelSEEDReconstruction

HellsCanyon