Hocnonsense's repositories
append_metabolic
A scalable high-throughput metabolic and biogeochemical functional trait profiler
biopython
Official git repository for Biopython (originally converted from CVS)
Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
cellular-automata
Cellular Automata generator
cmseq
Set of utilities on sequences and BAM files
cobra
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
DGantt
Java Gantt Chart Library
EasyMicrobiomeR
Using R language in microbiome analysis
gunc
Python package for detection of chimerism and contamination in prokaryotic genomes.
hex_sweep
Hexagonal Minesweeper
mantis
A package to annotate protein sequences
opentims
Open-source C++ and Python module for opening binary timsTOF data files.
pangenomics
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
PopCOGenT
Microbial Populations as Clusters Of Gene Transfer
pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
snakemake-interface-executor-plugins
This package provides a stable interface for interactions between Snakemake and its executor plugins.
snakemarkdown
vscode extension
vscode-markdown-tm-grammar
VS Code built-in markdown extension's Textmate grammar
vscode-memo
Markdown knowledge base with bidirectional [[link]]s built on top of VSCode
WholeCellEcoliRelease
Release of the whole cell E. coli model.
Zutilo
Zotero plugin providing some additional editing features