Installing OmegaFold in Ubuntu v22.04

Question

Installing OmegaFold in Ubuntu v22.04

biotech70 opened this issue 2 years ago · comments

mohammad mahmoudi gomari commented 2 years ago

Hi,
What is the best version of Python and GCC version to install OmegaFold?

Debadutta Patra · Answer 1 · Tue Sep 06 2022 14:17:52 GMT+0800 (China Standard Time)

I am using an Anaconda environment in Ubuntu 22.04 for OmegaFold. Anaconda should provide you most of the dependencies and your GCC version should not be an issue

mohammad mahmoudi gomari · Answer 2 · Wed Sep 07 2022 02:24:29 GMT+0800 (China Standard Time)

What is the best workflow for installing OmegaFold using the Anaconda environment?

Debadutta Patra · Answer 3 · Thu Sep 08 2022 14:30:01 GMT+0800 (China Standard Time)

You can install Anaconda via the installation script from their website. After that, make sure that the conda environment is active, which should be evident from the word "base" in your command prompt. If your conda environment is not active use:
conda activate
Now you can follow the instructions in the README.md file to install Omegafold, in short use the following commands.
pip install git+https://github.com/HeliXonProtein/OmegaFold.git
wget https://helixon.s3.amazonaws.com/release1.pt
mv release1.pt ~/.cache/omegafold_ckpt/model.pt