HadrienG

InSilicoSeq

:rocket: A sequencing simulator

tutorials

:books: Various bioinformatics tutorials

taxadb

:hatching_chick: locally query the ncbi taxonomy

nanoflow

:microscope: De novo assembly of nanopore reads using nextflow

2019_classifiers_benchmark

Benchmarking of metagenomic classifiers

wiz

takes a metagenome-assembled-genome and does a lot of fancy stuff with it

2018_coral_16S

2019-02-14-elixir-prague

Bioinfo

Bioinformatics

bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

bioconda-recipes

Conda recipes for the bioconda channel.

blog

my blog

CheckM

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

dockerfiles

a collection of docker files for bioinformatics --

doctor-tracker

A menubar app to be productive and finish your PhD on time

dotfiles

my dotfiles

git-blog

Software Carpentry introduction to Git for novices.

git-novice

gwas_benchmarks

hadrieng.github.io

my website

halftime

http://www.hadriengourle.com/halftime/

hmp

Hadrien's metatranscriptomics pipeline

KrakenTools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

modular-code-development

Modular code development lesson.

ohjh-example-notebooks

Explore your personal data with https://notebooks.openhumans.org

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

test-datasets

Test data to be used for automated testing with the nf-core pipelines

thesis_defence

https://www.hadriengourle.com/thesis_defence

tools

Python package with helper tools for the nf-core community.