SLU Global Bioinformatics Centre

galaksio

An easy-to-use way for running Galaxy workflows.

course

Resources for our bioinformatics course

breedmaps

Later

cluster_doc

User documentation for our cluster

ENAbler

programmatic ena submission (work in progress)

metagenome-binning

survey

This is the curated version of the Open Data survey and Pigweb analysis. You can use this Rmarkdown template to

weatherdata

This project will integrate data from SLU Lantmet and SMHI for data analysis

anigalaxy

Developing a local Galaxy implementation for Animal science and genetics

kronos

the group's intranet

metlab_tools

automated build of various bioinformatics software

sgbc.slu.se

the group website

sge_scripts

Repository to aggregate useful qsub scripts for our users

tutorials

:notebook_with_decorative_cover: Various bioinformatics tutorials

app-galaksio

BarcodeBonanza

NextFlow workflows for managing 16S rRNA data using DADA2

capture

the capture-seq assembler

DFdashboard

A Dashboard providing farmers with a Dashboard accessing data from Gigacow

Galaksio-py3

A Python 3 version of Galaksio

kirk

captain of the enterprise

metlab

surveys-example

Surveys host the R markdown code necessary to analyse surveys and compare results with the State of Open Data survey. The markdown book contain a large number of code snippets useful to process and visualise survey data from Netigate surveys and the State of Open Data survey results which use somewhat different data formats.

useGalaksio

Creating a website for generation of Galaksio demo websites.