Ivan's repositories
2018-Alliance-for-Global-Health-and-Science-Makerere-University_MCA
2018 Alliance for Global Health and Science, Makerere University, Microbial Community Analysis
bacterialGWAS
A pipeline for performing genome-wide association tests for bacterial genomes.
gbproks
Prokaryotic Genbank Downloading and Processing Tools
MobileGeneticElementDatabase
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
pythonClass
Code for Programming 1
RATT-with-GFF
RATT-with-GFF enables Rapid Annotation Transfer Tool (RATT) to be used with a GFF as your annotation file. RATT is a great tool for transferring annotations from one genome to another, but requires the annotations be in EMBL format. This pipeline is designed to use existing file conversion tools in order to run RATT with GFF annotations files
sra_read_downloader
A handy script for downloading reads from any kind of accession from the SRA.
storyboard
Generate PDFs, ePUB and Mobi files from videos
to-gff
Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)