GunzIvan28

30-Days-Of-Python

30 days of Python programming challenge is a step by step guide to learn the Python programming language in 30 days. This challenge may take up to 100 days, follow your own pace.

animation

A gallery of animations in statistics and utilities to create animations

asap

A scalable bacterial genome assembly, annotation and analysis pipeline

bactopia

A flexible pipeline for complete analysis of bacterial genomes

biopython-notebook

Notebooks to introduce biopython

blogdown

Create Blogs and Websites with R Markdown

CMplot

📊 Circular and Rectangular Manhattan Plot

CoursesCRG_Containers_Nextflow_May_2021

Slow-paced 4-day containers and Nextflow course for beginners.

Deepbinner

a signal-level demultiplexer for Oxford Nanopore reads

eager

A fully reproducible and state of the art ancient DNA analysis pipeline

genomics

Sphinx documentation source for a computational genomics tutorial.

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

git_training

An interactive git training meant to teach you how git works, not just which commands to execute

hosting-pages

Jovian

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

Metagenomics

microbiome16S_pipeline

Reproducible Scalable Pipeline For Amplicon-based Metagenomics (RSP4ABM) is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

Mini-project-group-06

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

porefile

A Nextflow full-length 16S profiling pipeline for ONT reads

rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

Roary

Rapid large-scale prokaryote pan genome analysis

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

starter-academic

🎓 Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify

tools

A collection of command-line tools I wrote to make various repetitive tasks more convenient

toytree

A minimalist tree plotting library using toyplot graphs

transcriptome_assembly

Biocore's de novo transcriptome assembly workflow based on Nextflow

vcfR

Tools to work with variant call format files

WGS_SNP_pipelines

Collection of SNP pipelines to analyze assembled genomes