Gregory Schwartz's repositories
too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
birch-beer
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
ploterific
Basic plotting of tabular data for the command line.
multiomics-single-cell-t1d
Supplementary code for paper
journal_title_abbreviations
Journal title abbreviations file to be used with pandoc-citeproc
styles
Official repository for Citation Style Language (CSL) citation styles.
GregorySchwartz.github.io
Personal website
starter-hugo-academic
🎓 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
hvega-theme
A professional theme for publication quality figures.
ox-hugo
A carefully crafted Org exporter back-end for Hugo
nixpkgs
Nix Packages collection
differential
Finds out whether an entity comes from different distributions (statuses).
reveal.js-d3
Full integration of animated javascript-based visualizations (D3, vega-lite, semiotic, etc ...) into Reveal.js presentations
sparse-linear-algebra
Numerical computation in native Haskell
spectral-clustering
Library for spectral clustering.
tex-join-bib
Compile separate tex files with the same bibliography.
tooManyCellsR
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
elbow
Use rotations to identify the elbow point of a two-dimensional long-tailed distribution.
heatitup-complete
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.
matrix-market-attoparsec
Attoparsec parsers for the NIST Matrix Market format
too-many-cells-paper-analyses
Collection of scripts used in the TooManyCells paper
hierarchical-spectral-clustering
Hierarchical spectral clustering of a graph.
Haskell-Turtle-Library
Shell programming, Haskell style
streaming-utils
experimental http, attoparsec and pipes material for `streaming` and `streaming-bytestring`
modularity
Find the modularity of a network.
collapse-duplication
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.