Gregory Schwartz's repositories
too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
tooManyCellsR
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
ploterific
Basic plotting of tabular data for the command line.
hierarchical-spectral-clustering
Hierarchical spectral clustering of a graph.
birch-beer
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
multiomics-single-cell-t1d
Supplementary code for paper
spectral-clustering
Library for spectral clustering.
sparse-linear-algebra
Numerical computation in native Haskell
too-many-cells-paper-analyses
Collection of scripts used in the TooManyCells paper
collapse-duplication
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.
differential
Finds out whether an entity comes from different distributions (statuses).
elbow
Use rotations to identify the elbow point of a two-dimensional long-tailed distribution.
GregorySchwartz.github.io
Personal website
Haskell-Turtle-Library
Shell programming, Haskell style
heatitup-complete
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.
hvega-theme
A professional theme for publication quality figures.
journal_title_abbreviations
Journal title abbreviations file to be used with pandoc-citeproc
matrix-market-attoparsec
Attoparsec parsers for the NIST Matrix Market format
modularity
Find the modularity of a network.
nixpkgs
Nix Packages collection
ox-hugo
A carefully crafted Org exporter back-end for Hugo
reveal.js-d3
Full integration of animated javascript-based visualizations (D3, vega-lite, semiotic, etc ...) into Reveal.js presentations
starter-hugo-academic
🎓 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
streaming-utils
experimental http, attoparsec and pipes material for `streaming` and `streaming-bytestring`
styles
Official repository for Citation Style Language (CSL) citation styles.
tex-join-bib
Compile separate tex files with the same bibliography.