André Soares's repositories
mads_scripts
Bionformatics scripts used for the Meta-Analysis of the Deep Subsurface.
shewanella_sm
Filtering and analysing Shewanellaceae OTUs from the 2012 EMP dataset.
DataUsage_Data_Analysis
Code repository for the analysis of data pertaining to the Data Usage manuscript (Probst, Hug, Hatzenpichler, Moraru, Soares, Heyder, The Data Reuse Consortium, Meyer, in prep)
emp2012_alg
R scripts used to generate figures for Soares et al. 2017
Foxfonna_2016_16S
Code used to generate figures in Dayal et al. (in prep)
Moonmilk_MG_analysis
R scripts used for the analysis of moonmilk metagenomes.
raman_data_analysis
Script used to analyse Raman data (mostly borrowed from http://lmi.cnrs.fr/r/practical-case-recursive-data-treatment.html)
sgg_data_analysis
Scripts for data analysis and reporting on the SGG dataset.
VITAL
Data analysis repo for VITAL
maker-docker
Docker image as base for building full MAKER image
MuDoGeR
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
notesfromfieldseq.github.io
An online lab notebook for experiments in field sequencing
Prospectomics_snakemake
Snakemake workflows for WP5 of the Prospectomics project (EU-sponsored, under the Future and Emerging Technologies (FET) initiative, part of Horizon 2020).
sggmeta_singularity
A Singularity image to base metagenomics analyses on.
topel-research-group-labnotebook
Notes of bioinformatics done for the Töpel Research Group.