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Generic Model Organism Database Project (GMOD)

Generic Model Organism Database Project

GMOD

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Home Page:http://gmod.org

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Generic Model Organism Database Project's repositories

Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

Language:GroovyLicense:NOASSERTIONStargazers:124Issues:37Issues:1861

GBrowse

the Generic Genome Browser

Language:PerlLicense:NOASSERTIONStargazers:49Issues:22Issues:39

jbrowse-jupyter

A python package for showing JBrowse views

Language:PythonLicense:Apache-2.0Stargazers:23Issues:19Issues:22

vcf-js

High performance Variant Call Format (VCF) parser in pure JavaScript

Language:TypeScriptLicense:MITStargazers:23Issues:14Issues:21

jbrowse-registry

JBrowse 1.x Plugin Registry

Language:HTMLLicense:BSD-2-ClauseStargazers:14Issues:18Issues:12

dash_jbrowse

A suite of Dash components for JBrowse's embeddable components

Language:PythonLicense:NOASSERTIONStargazers:13Issues:14Issues:13

gff-js

parse and format streams of GFF3, for node or webpack

Language:TypeScriptLicense:MITStargazers:11Issues:16Issues:4

indexedfasta-js

Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

Language:TypeScriptLicense:MITStargazers:11Issues:12Issues:22

abortable-promise-cache

add AbortController support to a cache of async requests

Language:TypeScriptLicense:MITStargazers:6Issues:11Issues:2

jbrowse-plugin-gdc

JBrowse 2 plugin for integrating with GDC resources

Language:TypeScriptStargazers:6Issues:10Issues:38

jblast-jbconnect-hook

JBrowse/Galaxy-Blast Plugin

Language:CSSLicense:NOASSERTIONStargazers:4Issues:7Issues:263

twobit-js

Read .2bit files with pure JS. Works in node or webpack.

Language:TypeScriptLicense:MITStargazers:4Issues:15Issues:7

ixixx-js

Language:TypeScriptLicense:MITStargazers:3Issues:10Issues:5

jbrowse-plugin-ideogram

JBrowse 2 plugin for rendering ideograms

Language:TypeScriptLicense:Apache-2.0Stargazers:2Issues:4Issues:9

jbrowse-plugin-list

List of plugins for the JBrowse 2 plugin store.

Stargazers:2Issues:12Issues:2

GenomeFeatureComponent

Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component

Language:JavaScriptStargazers:1Issues:9Issues:26

gtf-js

GTF parsing library in JavaScript

Language:TypeScriptLicense:MITStargazers:1Issues:19Issues:0

jb2profile

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jbconnect

JBConnect, an optional server-side component of JBrowse

Language:JavaScriptLicense:NOASSERTIONStargazers:1Issues:7Issues:160

jbrowse-plugin-reactome

JBrowse 2 plugin integrating with Reactome

Language:TypeScriptLicense:Apache-2.0Stargazers:1Issues:21Issues:0

jbrowse-jupyter-tutorial

A demo of using jupyter-jbrowse locally

Language:Jupyter NotebookStargazers:0Issues:3Issues:7

trix-js

Read UCSC Trix indexes in pure JavaScript

Language:TypeScriptLicense:Apache-2.0Stargazers:0Issues:19Issues:2

apollo-gmod-js

Developed to connect to Apollo 3 (and maybe Apollo2)

Language:TypeScriptStargazers:0Issues:2Issues:33

Bio-Chado-Schema

Perl modules for working with a Chado schema

Language:PerlStargazers:0Issues:13Issues:0

jbrowse-plugin-icgc

JBrowse 2 plugin to provide connectivity with the ICGC

Language:TypeScriptLicense:Apache-2.0Stargazers:0Issues:19Issues:0

jbrowse-plugin-multilevel-linear-view

JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels

Language:TypeScriptLicense:Apache-2.0Stargazers:0Issues:21Issues:8

jbrowse-react-circular-genome-view-vanillajs-demo

Language:JavaScriptStargazers:0Issues:3Issues:0

jbrowse-react-linear-genome-view-vanillajs-demo

Language:JavaScriptStargazers:0Issues:3Issues:0

jbrowse_docker

A repo for JBrowse-dedicated dockerfiles.

License:MITStargazers:0Issues:12Issues:0

nclist-js

Read JBrowse v1 nested containment list feature stores from modern JS

Language:TypeScriptLicense:MITStargazers:0Issues:12Issues:1