Fred Hutch Cancer Center

SEACR

SEACR: Sparse Enrichment Analysis for CUT&RUN

stlite-template

Template for stlite single-page app

bash-workbench

BASH Workbench

batchman

Batchman - Nextflow on Fargate x AWS Batch

fs-cleaner

delete or archive files based on last access time

sra-pipeline

download sra files from SRA, pipe through fastq_dump and bowtie2 to S3, in a container

coop

Blog for the Fred Hutch Bioinformatics and Data Science Cooperative

tgR

Convenience R package for the Translational Genomics Repository

aws-batch-wrapper

Simplify interaction with AWS Batch at Fred Hutch

batch-dashboard

dv-cambiagrove

Data Visualization / Cambia Grove Collaboration

HutchNER

The Fred Hutch Named Entity Recognition general training and execution pipeline

swift-switch-account

quickly switch to different openstack swift account for python-swiftclient

interop-nf

InterOp QC Reporting - Nextflow

batch-demo

COVIDTrtTrialDesign

docker-python-interop

Docker image with the interop Python library installed

docker-sra-human-scrubber

Docker container running the sra-human-scrubber

getshiny-site

gig-map-library

Library of genes-in-genomes maps

github_team_syncer

HVTNGitWorkshop

IC-RISC-Working

IC-RISC working

mouseinventory

A system for research institutions to track holders of mice

nf-ngscheckmate

Nextflow workflow running NGScheckmate

quantify-view-cells

Perform quantification of cells across images in parallel and inspect the results

sdor

Swift Directory Object Remover

sra-human-scrubber-nf

Apply the NCBI human read removal tool (HRRT) to mask human reads from metagenomic data

star-filter-fastq

Filter FASTQ files by alignment (STAR)

wiki-reindexer-lambda