Fred Hutch Cancer Center

motuz

Motuz - A web based infrastructure for large scale data movements between on-premise and cloud

wiki

SciWiki: Collective KnowledgeBase for Scientific Data and Use

easybuild-life-sciences

Howto and implementation documentation

gig-map

Build a map of genes present across a set of microbial genomes

VISCfunctions

shiny-app-template

Template for creating Shiny web applications

EBcb

EasyBuild container build - A docker container for building software with EasyBuild

r-shiny-base

Base Docker container for R Shiny apps

VISCtemplates

Tools for writing reproducible reports at VISC

pgMAP_pipeline

A Snakemake pipeline to enable guide RNA read mapping from dual-targeting CRISPR screens

shiny-cromwell

Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Taylor Firman.

who-is-who

A repo to create a who's who website for the Fred Hutch data community

cbioportal-data-formatting

A repository with easy-to-follow instructions on how to prepare you study data files for upload into cBioportal

target-data-viz

Shiny app for visualizing TARGET pediatric AML data

tfcb_2024

Course website for MCB 536 Tools for Computational Biology Fall 2024

r-shiny-server-base

Base Docker container for R Shiny apps (using Shiny Server)

rna-qc-tool

A Shiny app for interactive visualization of RNA quality control statistics

thymosight

ww-vc-trio_sanaz

Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them

amerigo

dmshelper

✏️ A tool for composing your NIH Data Sharing Plan

docker-proSCessoR

Docker image with libraries needed to run proSCessoR

gimap

Genetic Interaction MAPping for dual target CRISPR screens

itn-dashboard

ITN Dashboard for data generated from metricminer

Kinga_Study_BV_MacLean

Kinga Study on bacterial vaginosis (MacLean et al.)

PCa-PSA-Age-Trends

Analysis supporting "Trends in Age and Prostate-Specific Antigen at Prostate Cancer Diagnosis between 2010 and 2019"

pgmap

souper-star

Nextflow workflow running soupercell on barcoded cell subsets

swarm-build-helper

Wellington-et-al-2024

This is the code used for data analysis in the Wellington et al. 2024 paper.