FeynmanDNA

KYY's starred repositories

nvidia-docker

Build and run Docker containers leveraging NVIDIA GPUs

git-lfs

Git extension for versioning large files

Language:GoNOASSERTION12631 485 3032

pytorch-grad-cam

Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.

Language:PythonMIT9756 44 393

voxelmorph

Unsupervised Learning for Image Registration

Language:PythonApache-2.02198 48 441

stat_rethinking_2023

Statistical Rethinking Course for Jan-Mar 2023

Language:RCC0-1.02164 150 15

flit

Simplified packaging of Python modules

Language:PythonBSD-3-Clause2126 34 393

SimpleITK

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Language:SWIGApache-2.0849 37 664

SimpleITK-Notebooks

Jupyter notebooks for learning how to use SimpleITK

Language:Jupyter NotebookApache-2.0813 48 75

nipype

Workflows and interfaces for neuroimaging packages

Language:PythonNOASSERTION741 50 1356

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Language:PythonNOASSERTION686 54 917

DeepReg

Medical image registration using deep learning

Language:PythonApache-2.0552 17 397

elastix

Official elastix repository

Language:C++Apache-2.0449 24 257

connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

Language:C++LGPL-3.0342 27 57

neurite

Neural networks toolbox focused on medical image analysis

Language:PythonApache-2.0325 21 16

UpSetPlot

Draw UpSet plots with Matplotlib

Language:PythonNOASSERTION312 8 149

niivue

a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.

Language:TypeScriptBSD-2-Clause226 8 513

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

Language:PythonApache-2.084 18 227

nii2dcm

nii2dcm: NIfTI to DICOM creation with Python

Language:PythonNOASSERTION51 4 21

TemplateBuildingExample

Just when I thought you couldn’t possibly be any dumber, you go and do something like this… and totally redeem yourself!

Language:Shell21 4 7

mvpsstudio

Multiview Photometric Stereo (MVPS) Studio Hardware and Software for 3D Reconstruction

Language:PythonMIT17 20

GAV

A link prediction algorithm tailored to flow-driven spatial networks. Paper accepted @ WACV24

Language:Python17 10

GliODIL

Glioma Radiotherapy Design by Optimization of a Data and Physics Informed Discrete Loss

Language:PythonMIT17 10

CTP

Used to create perfusion maps of computed tomography perfusion

Language:R1300

MIDOG_reference_docker

Reference implementation of domain-adversarial training on a RetinaNet (to use as template in the MIDOG challenge)

Language:Python8 1 4

OpenSUSE-Python3

How to install Python3 in OpenSUSE from source

MIT7 10

MakeTheWorldABetterPlace

Online calculator that simulates DNA physical response to force, torque, protein energy, and DNA-inserts

Language:JavaScriptMIT6 2 5

Identify-Knot-Types-by-ML-PRE2020

Source code and data for "Identifying knot types of polymer conformations by machine learning" PhysRevE.101.022502

Language:Jupyter NotebookApache-2.03 10

TopCoW_Algo_Submission

Algorithm submission template repo for the TopCoW2023 challenge on grand-challnge

Language:Python300

dcm_qa_asl

DICOM to NIfTI/BIDS arterial spin labeling validation script

Language:ShellBSD-2-Clause3 20

CTP

Used to create perfusion maps of computed tomography perfusion

100