KYY's starred repositories
MakeTheWorldABetterPlace
Online calculator that simulates DNA physical response to force, torque, protein energy, and DNA-inserts
dipy
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
voxelmorph
Unsupervised Learning for Image Registration
TemplateBuildingExample
Just when I thought you couldn’t possibly be any dumber, you go and do something like this… and totally redeem yourself!
OpenSUSE-Python3
How to install Python3 in OpenSUSE from source
dcm_qa_asl
DICOM to NIfTI/BIDS arterial spin labeling validation script
connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Identify-Knot-Types-by-ML-PRE2020
Source code and data for "Identifying knot types of polymer conformations by machine learning" PhysRevE.101.022502
mvpsstudio
Multiview Photometric Stereo (MVPS) Studio Hardware and Software for 3D Reconstruction
stat_rethinking_2023
Statistical Rethinking Course for Jan-Mar 2023
pytorch-grad-cam
Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.
TopCoW_Algo_Submission
Algorithm submission template repo for the TopCoW2023 challenge on grand-challnge
MIDOG_reference_docker
Reference implementation of domain-adversarial training on a RetinaNet (to use as template in the MIDOG challenge)
nvidia-docker
Build and run Docker containers leveraging NVIDIA GPUs
SimpleITK-Notebooks
Jupyter notebooks for learning how to use SimpleITK
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)