Fan-yuan's starred repositories
ExpansionHunter
A tool for estimating repeat sizes
str-analysis
Scripts and utilities related to analyzing short tandem repeats (STRs).
ExpansionHunterDenovo
A suite of tools for detecting expansions of short tandem repeats
pyclone-vi
Fast method for inferring cancer clonal population structure from SNV data.
Create_PyClone_input
Python code to transform Sequenza segment output into PyClone input
DoAbsolute
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
NGTAS_pipeline
Computational pipeline to analyse Next Generation Targeted Amplicon Sequence data
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
Genomon-ITDetector
for detecting internal tandem duplication from genome sequence data.