FINitenet

bokeh

Interactive Data Visualization in the browser, from Python

pandora

潘多拉，一个让你呼吸顺畅的ChatGPT。Pandora, a ChatGPT client that lets you breathe freely.

sklearn-doc-zh

:book: [译] scikit-learn（sklearn） 中文文档

TBtools-II

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

GEO

ggally

R package that extends ggplot2

GeneGPT

Code and data for GeneGPT.

ViennaRNA

The ViennaRNA Package

bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

MOGONET

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.

Deep_learning_paper_tutorial

Share some classic papers and detailed notes in deep learning

mxfold2

MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration

bulk2space

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

RNAnorm

Normalization of RNA-seq gene expression

ggvolc

𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation

rna3db

A dataset for training and benchmarking deep learning models for RNA structure prediction

sradownloader

A script to make downloading of SRA/GEO data easier

BioSeqUtils

Extract Sequence from Genome According to Annotation File

ggpmisc

:exclamation: This is a read-only mirror of the CRAN R package repository. ggpmisc — Miscellaneous Extensions to 'ggplot2'. Homepage: https://docs.r4photobiology.info/ggpmisc/, https://github.com/aphalo/ggpmisc Report bugs for this package: https://github.com/aphalo/ggpmisc/issues

Pan_Ath

Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range"

ncrna-deep

Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"

RNAseqTool

A Shiny App for Interactive RNAseq Analysis and Visualization

LOST_and_FOUND

iFLAS

bbum

BBUM correction for significance testing of p values

RiboProfiler-manual

RankComp

Differential expression genes (DEGs) obtaining methods by R language.

BSgenome.Athaliana10.TAIR.TAIR10

BSgenome.Athaliana10.TAIR.TAIR10

Reference_standard_protocol

docs.chinese-quartet.org

Docs and discussion area for chinese quartet project.