Euphrasiologist

nu_plugin_plot

Plot numeric lists in Nushell as part of a pipeline

nu_plugin_bio

Bioinformatics plugin for nushell.

bib_to_refer

Turn a BibTex file format into a refer database for use with groff.

refer

A cli tool to store a local mutable bibliographic database.

site

My website living on a Raspberry Pi

Thesis

My PhD thesis, submitted in 2020 on the subject of taxonomic complexity in eyebrights and the British flora. This repository contains the markdown and latex documents, as well as the shell scripts to generate the final thesis.

aoc22

BASH solutions to advent of code 2022

floral

A small tool to print out floral formulae of flowering plants.

bioconda-recipes

Conda recipes for the bioconda channel.

calc_stats

cbsrs

Circular Binary Segmentation for Rust.

core

Core functionality shared across BlobToolKit tools

cross_ploidy

A review on the emerging importance of cross-ploidy hybridisation and introgression

euphrasia_host_parasite

Scripts for two experiments over the years 2017/18 understanding variation in performance of Euphrasia between hosts and testing for Euphrasia:Host interactions

euphrasiologist.github.io

fertree

Floristic_DNA_Barcoding

The source code, model outputs and figures from the paper "Genetic factors predict hybrid formation in the British flora"

gb

Simple group-by algorithm for tabular data.

genomehubs

project documentation and issue tracker

loess

Local regression in Rust.

needletail

Fast FASTX parsing and k-mer methods in Rust

nu_plugin_regex

nu_scripts

A place to share Nushell scripts with each other

nushell

My nushell config

oxygraphis

An ecological graph library and CLI.

pixel-art

puccinia

telomeric-trim

Get reads with telomeric repeat, trim the repeat and orient the trimmed end as the new beginning

tidk_paper

trfr

Parse output from tandem repeat finder