ARU life sciences

mmft

My Minimal Fasta Toolkit

coding_club

Coding club ideas

bioinformatics

General help and topics on bioinformatics

extract_nhmmer_tblout

Get the nhmmer identified sequences back from a FASTA file.

cbsrs

Circular Binary Segmentation for Rust.

hmm_tblout

Parse `--tblout` files from `nhmmer`.

mars

Max's restricted shell

paf

A PAF file parser.

plopaf

A PAF plotter based heavily on https://github.com/ekg/pafplot.

psd

PAF sequence divergence calculations.

rep

reputils

A small collection of command line functions to deal with TE alignments.

tr_detection

TR detection across plants.

undergraduate_project

Undergraduate project template