Ensembl Project

postgap

Linking GWAS studies to genes through cis-regulatory datasets

ensembl-git-tools

A collection of tools which Ensembl uses to work with Git

homebrew-ensembl

Core formula for Ensembl

plant_tools

Tools and documentation for Plants

trackhub-registry

Specifications and implementation of the TrackHub registry

homebrew-external

Formulas hosted from the homebrew project from retired or third party repos with minor edits

gene_symbol_transformer

Transformer model for gene symbol assignment of protein coding sequences

GIFTS

homebrew-cask

Meta formulas for homebrew/linuxbrew

cpanfiles

A collection of additional cpanfiles that have no natural home with any project

ensembl-2020-genome-search

Genome search backend microservice for ensembl 2020

gene_pcp

Genebuild project - classifying protein-coding potential via a machine learning approach

gsoc-dl-protein-coding-genes

python-requirements

Sets of requirements files required to install a tool or setup a virtualenv

repeat_nf

Code for NextFlow pipeline to find and annotate repeats (GSoC project)

1000G-tools

Old 1000G scripts used for tools on GRCh37 site

ensembl-genome-browser

Ensembl genome browser

ensembl-refget-proxy

Python application to proxy against Ensembl Refget services

zmap

tark-refseq-loader

decisions

A central place for decisions for the new Ensembl project

ensembl-echo

ensembl-genes-containers

ensembl-licence-manager

Ensembl Licence Manager

ensembl-valuesets

Ensembl value sets storage area

ensembl-valuesets-api

ensemblgenomes.org

Source code for ensemblgenomes.org

molecular_interaction_resource

REST REST API that manages the endpoints to interact with the Molecular interactions database resource from Ensembl

peregrine-eachorevery

The EachOrEvery data-structure and supporting library to handle infinite repeating lists

thr_hubcheck_api