Ebedthan

xgt

Efficient and fast querying and parsing of GTDB's data

elrd

Module 1 of cs course in french

hkgfinder

Find housekeeping genes in prokaryotic (meta)genomic data

mbdr

Modelling biological data with R

new-git-project

test

darwin

Create (rapid) neighbor-joining tree from sequences using mash distance

align-rs

fastchaos

(Integer) chaos game representation for DNA sequences

sabreur

fast, reliable and handy demultiplexing tool for fastx files

hyperex

Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.

ebedthan.github.io

Personal website

corebiota

Probabilistic partition of count data to identify core species

rhizoserver

The rhizobia server

bakta-web-ui

UI for Bakta web app

rust-msbwt

place for building up a msbwt resource in Rust

niffler

Simple and transparent support for compressed files.

aebou_blog

My personnal website

rust-catfish

Read and Write Catfish files

rust-bloom-filter

A fast Bloom filter implementation in Rust

mashphage

Fast and accurate whole-genome clustering of (actino) bacteriophages

ggplot2

An implementation of the Grammar of Graphics in R

cutadapt

Cutadapt removes adapter sequences from sequencing reads

arc

datamashphage

arewebioyet.github.io

Rust in bioinformatics and computational biology

git-cliff

A highly customizable Changelog Generator that follows Conventional Commit specifications ⛰️

containers

Bioinformatics containers

clap

A full featured, fast Command Line Argument Parser for Rust

bgzip-rs

bgzip support for Rust