DongqingSun96 / STRIDE

STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.

DongqingSun96/STRIDE Issues

R spe object to 10xh5 object
Updated a year ago
Human_heart_scRNA_celltype_curated.txt
Updated a year ago
what each column in the Human_heart_ST_location.txt mean
Updated a year ago
raise KeyError(key) from err KeyError: 'P0_v1_1123_13550_22950'
Updated 2 years ago5
How to increase the number of passes or iterations to improve accuracy
Closed 2 years ago2
IndexError: cannot do a non-empty take from an empty axes.
Updated 2 years ago1
Deconvolution sometimes return empty proportions
Updated 2 years ago3
ValueError: Cannot compute LDA over and empty collection
Closed 2 years ago2
Input files for running STRIDE
Closed 2 years ago3
UnboundLocalError: local variable 'celltypes' referenced before assignment
Closed 2 years ago2