Danread's starred repositories
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
training-collection
Collection of bioinformatics training materials
PlanktoScope
Open and Affordable Quantitative Imaging Platform
MicrobeCensus
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
metagenomics
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
Phosphorus-cycling-database
This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
circlepackeR
R htmlwidget for circle packing visualization
reference_database_creator
creating reference databases for amplicon sequencing
MetaBarFlow
Workflow for processing NGS data from metabarcoding experiments
MsRDB-Manuscript-Code
This is the repository archiving code and data for MsRDB manuscript
MicrobiomeCluster
This package includes basic functions calculating OTU and CROTU abundance. It also provides distance and levels of tree nodes and tips from its root. Researchers can use MicrobiomeCluster package to manipulate an existing tree by trimming or growing branches, or check if a Beta metric is suitable for clustering a dataset.