biologger / speciesprimer

The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

biologger/speciesprimer Issues

AnnotRptUrl DTD Error
Updated 2 months ago1
How to run without Doctor container?
Updated 2 months ago2
OSError: [Errno 30] Read-only file system: '/pipeline/tmp_config.json'
Updated 2 months ago1
design for multi-copy core genes
Closed 2 months ago1
Error during Entrez.efetch
Closed 6 months ago11
XML file is empty
Updated 8 months ago4
Design primers for unknown bacteria species
Closed a year ago2
Single results file not created
Updated a year ago1
md5 checksum failure
Updated a year ago3
No BLAST DB was found
Closed a year ago2
Genome downloads failing:
Closed 2 years ago1
Could you record a video showing the whole process of using this software
Closed 2 years ago3
Serovar level
Updated 2 years ago1
Probe seq empty?
Updated 2 years ago5
How to apply speciesprimer in my scenario?
Closed 3 years ago5
SpeciesPrimer not compatible with rootless docker?
Updated 3 years ago
primer pairs left after secondary amplicon QC
Updated 3 years ago3
Already in excludedassemblies
Closed 3 years ago2
You need to provide at least 2 files to build a pan genome
Closed 3 years ago1
Error: "No .gff files found for QualityControl rRNA"
Closed 3 years ago3
conda recipe?
Updated 3 years ago1
List of good target binding primers
Updated 4 years ago2
Decode the gene name from the results table
Closed 4 years ago2
Pause SpeciesPrimer
Updated 4 years ago2
gene_presence_absence.csv file interpretation
Closed 4 years ago1
Design primers for viruses
Updated 4 years ago5
Pathovar level
Updated 4 years ago5
primer_1_results.xml absent?
Closed 5 years ago8
ValueError: Your XML file was empty
Closed 5 years ago1
blastdb download
Closed 5 years ago4